species:   Rhsol
pid:       PID0534
parent:    Rhi-milR-46
paralog:   
locus:     KB317913.1:207-317
matures:   ['CAUCAAGGCACUGGAGGAAUGGC', 'CAAAAUCCUUCUCUGGUGCCAAAGCCAA']
srr:       SRR1994872
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994872.cram KB317913.1:207-317

17 out of bounds
19 alignments
13 proper strand
8 stranded perfect matches

    *******************************                             **************************                     
ACAUGUCAAAAUCCUUCUCUGGUGCCAAAGCCAACUAUGAUACACACAAUAAAGAAUUGUUGGCCAUCAUCAAGGCACUGGAGGAAUGGCAAAUCUUCUUAGAAGCAACAG
...(((((...((((((...((((((...((((((.......................)))))).........)))))))))))).)))))...((((...))))......
-------------------------------------------------------------------CAUCAAGGCACUGGAGGAAUGGC--------------------- l=23 a=0 c
------CAAAAUCCUUCUCUGGUGCCAAAGCCAA----------------------------------------------------------------------------- l=28 a=0 c*
------------------------------------------------------------------UCAUCAAGGCACUGGAGGAAUGGC--------------------- l=24 a=3 ma
------CAAAAUCCUUCUCUGGUGCCAAAGCCAAC---------------------------------------------------------------------------- l=29 a=0 ma*

-----------------------------------------------------------------------AAGGCACUaGAGGAAUGGCAA------------------- l=21 a=1 
----------------------------------------------------------------------CAAGGCACUGGAGGAAUGGC--------------------- l=20 a=1 
---------------------------------------------------------------------UCAAGGCACUGGAGGAAUGGC--------------------- l=21 a=1 
---------------------------------------------------------------------UCAAGGCACUGGAGGAAUGGCAcA------------------ l=24 a=1 
---------------------------------------------------------------------UCAAGGCACUaGAGGAAUGGCAAA------------------ l=24 a=1 
--------------------------------------------------------------------AUCAAGGCACUGGAGGAAUGGCA-------------------- l=23 a=2 
-------------------------------------------------------------------CAUCAAGGCACUGGAGGAAUGGCA-------------------- l=24 a=1 
------------------------------------------------------------------UaAUCAAGGCACUGGAGGAAUGG---------------------- l=23 a=1 
------------------------------------------------------------------UCAUCAAGGCACUGGAGGAAUGGC--------------------- l=24 a=3 (ma)
------------------------------------------------------------------UaAUCAAGGCACUGGAGGAAUGGC--------------------- l=24 a=1 

mb-01011
ax-1001011
ku-01
ss-111110101100
fn-001
